Welcome to depmap_omics’s documentation!

This is the unifying documentation for recording omics pipelines implementations for DepMap portals.

• Whole genome sequencing pipeline for DepMap
  • Mutation calling pipeline
  • Mutation annotation and filtering pipeline
  • CNV calling pipeline
  • Absolute CNV calling pipeline
  • Structural variation calling pipeline
• Whole exome sequencing pipeline for DepMap
• RNA-seq pipeline
• About the project

Indices and tables

• :ref:genindex

• :ref:modindex

• :ref:search