update_solution

Inputs

Required

• purecn_rds (File, required)

• sampleID (String, required)

• solution_num (Int, required)

Optional

• run_update_solution.hardware_disk_size_GB (Int?)

• run_update_solution.hardware_memory_GB (Int?)

• run_update_solution.hardware_preemptible_tries (Int?)

Defaults

• run_update_solution.purecn_docker (String, default=”markusriester/purecn:2.2.0”)

Outputs

• variants (File)

• loh (File)

• genes (File)

• dnacopy (File)

• selected_solution (File)

• purity (String)

• ploidy (String)

• contamination (String)

• flagged (String)

• comment (String)

• wgd (String)

• loh_fraction (String)

• cin (String)

• cin_allele_specific (String)

• cin_ploidy_robust (String)

• cin_allele_specific_ploidy_robust (String)

run_update_solution

Inputs

Required

• purecn_rds (File, required)

• sampleID (String, required)

• solution_num (Int, required)

Optional

• hardware_disk_size_GB (Int?)

• hardware_memory_GB (Int?)

• hardware_preemptible_tries (Int?)

Defaults

• purecn_docker (String, default=”markusriester/purecn:2.2.0”)

Outputs

• dnacopy (File)

• variants (File)

• loh (File)

• genes (File)

• selected_solution (File)

• table (Array[String])

• purity (String)

• ploidy (String)

• contamination (String)

• flagged (String)

• comment (String)

• wgd_table (Array[String])

• wgd (String)

• loh_fraction (String)

• cin (String)

• cin_allele_specific (String)

• cin_ploidy_robust (String)

• cin_allele_specific_ploidy_robust (String)