samtofastq_workflow

Inputs

Required

• disk_space (Int, required)

• input_bam_cram (File, required)

• memory (Float, required)

• num_preempt (Int, required)

• num_threads (Int, required)

• prefix (String, required)

Optional

• reference_fasta (File?)

Defaults

• java_memory (Int, default=floor((memory - 0.5)))

Outputs

• fastq1 (File)

• fastq2 (File)

samtofastq

author : Francois Aguet

Inputs

Required

• input_bam_cram (File, required)

• prefix (String, required)

Optional

• reference_fasta (File?)

Defaults

• disk_space (Int, default=400)

• java_memory (Int, default=floor((memory - 0.5)))

• memory (Float, default=64)

• num_preempt (Int, default=5)

• num_threads (Int, default=8)

Outputs

• fastq1 (File)

• fastq2 (File)