rnaseqc2_workflow

Inputs

Required

• bam_file (File, required)

• genes_gtf (File, required)

• sample_id (String, required)

Optional

• flags (String?)

• intervals_bed (File?)

• strandedness (String?)

Defaults

• rnaseqc2.disk_space (Int, default=75)

• rnaseqc2.memory (Int, default=8)

• rnaseqc2.num_preempt (Int, default=1)

• rnaseqc2.num_threads (Int, default=4)

Outputs

• gene_tpm (File)

• gene_counts (File)

• exon_counts (File)

• metrics (File)

• insertsize_distr (File)

rnaseqc2

author : Francois Aguet

Inputs

Required

• bam_file (File, required)

• genes_gtf (File, required)

• sample_id (String, required)

Optional

• flags (String?)

• intervals_bed (File?)

• strandedness (String?)

Defaults

• disk_space (Int, default=75)

• memory (Int, default=8)

• num_preempt (Int, default=1)

• num_threads (Int, default=4)

Outputs

• gene_tpm (File)

• gene_counts (File)

• exon_counts (File)

• metrics (File)

• insertsize_distr (File)