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depmap_omics documentation
depmap_omics documentation
  • Whole genome sequencing pipeline for DepMap
  • Whole exome sequencing pipeline for DepMap
  • RNA-seq pipeline
  • About the project

WDL API

  • run_PureCN
  • PureCN
  • update_solution
  • run_update_solution
  • run_vcf_to_depmap
  • vcf_to_depmap
  • WGS_preprocessing
  • star_workflow
  • star
  • rnaseqc2_workflow
  • rnaseqc2
  • samtofastq_workflow
  • samtofastq
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Copyright © 2023, Simone Zhang, Alvin Qin @ Broad Institute CDS team
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